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1

[IEEE Twentieth IEEE International Symposium on Computer-Based Medical Systems - Maribor, Slovenia (2007.06.20-2007.06.22)] Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07) - A Large Scale Data Mining Approach to Antibiotic Resistance Surveillance

Giannopoulou, Eugenia G., Kemerlis, Vasileios P., Polemis, Michalis, Papaparaskevas, Joseph, Vatopoulos, Alkiviadis C., Vazirgiannis, Michalis

Year:

2007

Language:

english

File:

PDF, 292 KB

english, 2007

2

Ontology visualization methods---a survey

Katifori, Akrivi, Halatsis, Constantin, Lepouras, George, Vassilakis, Costas, Giannopoulou, Eugenia

Journal:

ACM Computing Surveys

Year:

2007

Language:

english

File:

PDF, 3.30 MB

english, 2007

3

An integrated ChIP-seq analysis platform with customizable workflows

Eugenia G Giannopoulou, Olivier Elemento

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.48 MB

english, 2011

4

Visualizing Meta-Features in Proteomic Maps

Eugenia G Giannopoulou, George Lepouras, Elias S Manolakos

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 630 KB

english, 2011

5

Proteomic Feature Maps: A new visualization approach in proteomics analysis

Eugenia G. Giannopoulou, Spiros D. Garbis, Antonia Vlahou, Sofia Kossida, George Lepouras, Elias S. Manolakos

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 725 KB

english, 2009

6

Pharmacoproteomic Study of the Natural Product Ebenfuran III in DU-145 Prostate Cancer Cells: The Quantitative and Temporal Interrogation of Chemically Induced Cell Death at the Protein Level

Roumeliotis, Theodoros I., Halabalaki, Maria, Alexi, Xanthippi, Ankrett, Dyan, Giannopoulou, Eugenia G., Skaltsounis, Alexios-Leandros, Sayan, Berna S., Alexis, Michael N., Townsend, Paul A., Garbis,

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 698 KB

english, 2013

7

NFIB is a governor of epithelial–melanocyte stem cell behaviour in a shared niche

Chang, Chiung-Ying, Pasolli, H. Amalia, Giannopoulou, Eugenia G., Guasch, Géraldine, Gronostajski, Richard M., Elemento, Olivier, Fuchs, Elaine

Journal:

Year:

2013

Language:

english

File:

PDF, 1.86 MB

english, 2013

8

Search for Potential Markers for Prostate Cancer Diagnosis, Prognosis and Treatment in Clinical Tissue Specimens Using Amine-Specific Isobaric Tagging (iTRAQ) with Two-Dimensional Liquid Chromatography and Tandem Mass Spectrometry

Garbis, Spiros D., Tyritzis, Stavros I., Roumeliotis, Theodoros, Zerefos, Panagiotis, Giannopoulou, Eugenia G., Vlahou, Antonia, Kossida, Sophia, Diaz, Jose, Vourekas, Stavros, Tamvakopoulos, Constant

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.67 MB

english, 2008

9

Synergistic Activation of Inflammatory Cytokine Genes by Interferon-γ-Induced Chromatin Remodeling and Toll-like Receptor Signaling

Qiao, Yu, Giannopoulou, Eugenia G., Chan, Chun Hin, Park, Sung-ho, Gong, Shiaoching, Chen, Janice, Hu, Xiaoyu, Elemento, Olivier, Ivashkiv, Lionel B.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.64 MB

english, 2013

10

A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters

Hatzi, Katerina, Jiang, Yanwen, Huang, Chuanxin, Garrett-Bakelman, Francine, Gearhart, Micah D., Giannopoulou, Eugenia G., Zumbo, Paul, Kirouac, Kevin, Bhaskara, Srividya, Polo, Jose M., Kormaksson, M

Journal:

Year:

2013

Language:

english

File:

PDF, 2.23 MB

english, 2013

11

Epigenomic Alterations in Localized and Advanced Prostate Cancer

Lin, Pei-Chun, Giannopoulou, Eugenia G., Park, Kyung, Mosquera, Juan Miguel, Sboner, Andrea, Tewari, Ashutosh K., Garraway, Levi A., Beltran, Himisha, Rubin, Mark A., Elemento, Olivier

Journal:

Year:

2013

Language:

english

File:

PDF, 1.98 MB

english, 2013

12

[IEEE 2008 12th International Conference Information Visualisation (IV) - London, UK (2008.07.9-2008.07.11)] 2008 12th International Conference Information Visualisation - An Interview-Based User Study on the use of Visualizations for Folder Browsing

Golemati, Maria, Katifori, Akrivi, Giannopoulou, Eugenia G., Daradimos, Ilias, Vassilakis, Costas, Lepouras, George, Halatsis, Constantin

Year:

2008

Language:

english

File:

PDF, 246 KB

english, 2008

13

[IEEE 2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Athens, Greece (2008.10.8-2008.10.10)] 2008 8th IEEE International Conference on BioInformatics and BioEngineering - VIP: Visualization of integrated proteomics data

Giannopoulou, Eugenia G., Lepouras, George, Manolakos, Elias S.

Year:

2008

Language:

english

File:

PDF, 7.59 MB

english, 2008

14

[IEEE 2007 11th International Conference Information Visualization (IV '07) - Zurich, Switzerland (2007.07.4-2007.07.6)] 2007 11th International Conference Information Visualization (IV '07) - Evaluating the Significance of the Windows Explorer Visualization in Personal Information Management Browsing tasks

Golemati, Maria, Katifori, Akrivi, Giannopoulou, Eugenia G., Daradimos, Ilias, Vassilakis, Costas

Year:

2007

Language:

english

File:

PDF, 303 KB

english, 2007

15

[IEEE 2008 21st International Symposium on Computer-Based Medical Systems (CBMS) - Jyvaskyla, Finland (2008.06.17-2008.06.19)] 2008 21st IEEE International Symposium on Computer-Based Medical Systems - ProtCV: A Tool for Extracting, Visualizing and Validating Protein Clusters Using Mass Spectra Peak-Lists

Ventoura, Stavroula, Giannopoulou, Eugenia G., Manolakos, Elias S.

Year:

2008

Language:

english

File:

PDF, 447 KB

english, 2008

16

Inhibition of osteoclastogenesis and inflammatory bone resorption by targeting BET proteins and epigenetic regulation

Park-Min, Kyung-Hyun, Lim, Elisha, Lee, Min Joon, Park, Sung Ho, Giannopoulou, Eugenia, Yarilina, Anna, van der Meulen, Marjolein, Zhao, Baohong, Smithers, Nicholas, Witherington, Jason, Lee, Kevin, T

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

17

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer

Chakravarty, Dimple, Sboner, Andrea, Nair, Sujit S., Giannopoulou, Eugenia, Li, Ruohan, Hennig, Sven, Mosquera, Juan Miguel, Pauwels, Jonathan, Park, Kyung, Kossai, Myriam, MacDonald, Theresa Y., Font

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.38 MB

english, 2014

18

The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers

Ceballos-Chávez, María, Subtil-Rodríguez, Alicia, Giannopoulou, Eugenia G., Soronellas, Daniel, Vázquez-Chávez, Elena, Vicent, Guillermo P., Elemento, Olivier, Beato, Miguel, Reyes, José C., Scacheri,

Journal:

Year:

2015

Language:

english

File:

PDF, 2.41 MB

english, 2015

19

Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation

Su, Xiaodi, Yu, Yingpu, Zhong, Yi, Giannopoulou, Eugenia G, Hu, Xiaoyu, Liu, Hui, Cross, Justin R, Rätsch, Gunnar, Rice, Charles M, Ivashkiv, Lionel B

Journal:

Nature Immunology

Year:

2015

Language:

english

File:

PDF, 2.67 MB

english, 2015

20

Histone Methyltransferase MMSET/NSD2 Alters EZH2 Binding and Reprograms the Myeloma Epigenome through Global and Focal Changes in H3K36 and H3K27 Methylation

Popovic, Relja, Martinez-Garcia, Eva, Giannopoulou, Eugenia G., Zhang, Quanwei, Zhang, Qingyang, Ezponda, Teresa, Shah, Mrinal Y., Zheng, Yupeng, Will, Christine M., Small, Eliza C., Hua, Youjia, Buli

Journal:

Year:

2014

Language:

english

File:

PDF, 5.73 MB

english, 2014

21

Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer

Beltran, Himisha, Prandi, Davide, Mosquera, Juan Miguel, Benelli, Matteo, Puca, Loredana, Cyrta, Joanna, Marotz, Clarisse, Giannopoulou, Eugenia, Chakravarthi, Balabhadrapatruni V S K, Varambally, Soo

Journal:

Nature Medicine

Year:

2016

Language:

english

File:

PDF, 2.46 MB

english, 2016

22

Use of RNA sequencing to evaluate rheumatic disease patients

Giannopoulou, Eugenia G, Elemento, Olivier, Ivashkiv, Lionel B

Journal:

Arthritis Research & Therapy

Year:

2015

Language:

english

File:

PDF, 853 KB

english, 2015

23

Regulation of Effector Treg Cells in Murine Lupus

Chandrasekaran, Uma, Yi, Woelsung, Gupta, Sanjay, Weng, Chien-Huan, Giannopoulou, Eugenia, Chinenov, Yurii, Jessberger, Rolf, Weaver, Casey T., Bhagat, Govind, Pernis, Alessandra B.

Journal:

Arthritis & Rheumatology

Year:

2016

Language:

english

File:

PDF, 807 KB

english, 2016

24

Epigenetic profiles signify cell fate plasticity in unipotent spermatogonial stem and progenitor cells

Liu, Ying, Giannopoulou, Eugenia G., Wen, Duancheng, Falciatori, Ilaria, Elemento, Olivier, Allis, C. David, Rafii, Shahin, Seandel, Marco

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 3.22 MB

english, 2016

25

Hypoxia-Sensitive COMMD1 Integrates Signaling and Cellular Metabolism in Human Macrophages and Suppresses Osteoclastogenesis

Murata, Koichi, Fang, Celestia, Terao, Chikashi, Giannopoulou, Eugenia G., Lee, Ye Ji, Lee, Min Joon, Mun, Se-Hwan, Bae, Seyeon, Qiao, Yu, Yuan, Ruoxi, Furu, Moritoshi, Ito, Hiromu, Ohmura, Koichiro,

Journal:

Year:

2017

Language:

english

File:

PDF, 3.96 MB

english, 2017

26

Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF

Kang, Kyuho, Park, Sung Ho, Chen, Janice, Qiao, Yu, Giannopoulou, Eugenia, Berg, Karen, Hanidu, Adedayo, Li, Jun, Nabozny, Gerald, Kang, Keunsoo, Park-Min, Kyung-Hyun, Ivashkiv, Lionel B.

Journal:

Year:

2017

Language:

english

File:

PDF, 4.05 MB

english, 2017

27

Type I interferons and the cytokine TNF cooperatively reprogram the macrophage epigenome to promote inflammatory activation

Park, Sung Ho, Kang, Kyuho, Giannopoulou, Eugenia, Qiao, Yu, Kang, Keunsoo, Kim, Geonho, Park-Min, Kyung-Hyun, Ivashkiv, Lionel B

Journal:

Nature Immunology

Year:

2017

Language:

english

File:

PDF, 4.81 MB

english, 2017

28

[BMJ Publishing Group Ltd and European League Against Rheumatism 37th European Workshop for Rheumatology Research 2–4 March 2017 Athens, Greece - ()] Pathogenic stroma - 04.10 Chronic inflammation regulates the mrna stabilome in rheumatoid arthritis fibroblast-like synoviocytes

Loupasakis, Konstantinos, Kuo, David, Sohn, Christopher, Syracuse, Bethany, Giannopoulou, Eugenia G, Park, Sung Ho, Rätsch, Gunnar, Ivashkiv, Lionel B, Kalliolias, George D

Language:

english

File:

PDF, 90 KB

english

29

Tumor Necrosis Factor dynamically regulates the mRNA stabilome in rheumatoid arthritis fibroblast-like synoviocytes

Loupasakis, Konstantinos, Kuo, David, Sokhi, Upneet K., Sohn, Christopher, Syracuse, Bethany, Giannopoulou, Eugenia G., Park, Sung Ho, Kang, Hyelim, Rätsch, Gunnar, Ivashkiv, Lionel B., Kalliolias, Ge

Journal:

Year:

2017

Language:

english

File:

PDF, 5.54 MB

english, 2017

30

Bone protection by inhibition of microRNA-182

Inoue, Kazuki, Deng, Zhonghao, Chen, Yufan, Giannopoulou, Eugenia, Xu, Ren, Gong, Shiaoching, Greenblatt, Matthew B., Mangala, Lingegowda S., Lopez-Berestein, Gabriel, Kirsch, David G., Sood, Anil K.,

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.11 MB

english, 2018

31

MYC-dependent oxidative metabolism regulates osteoclastogenesis via nuclear receptor ERRα

Bae, Seyeon, Lee, Min Joon, Mun, Se Hwan, Giannopoulou, Eugenia G., Yong-Gonzalez, Vladimir, Cross, Justin R., Murata, Koichi, Giguère, Vincent, van der Meulen, Marjolein, Park-Min, Kyung-Hyun

Journal:

The Journal of clinical investigation

Year:

2017

File:

PDF, 2.46 MB

2017

32

Insights into rheumatic diseases from next-generation sequencing

Donlin, Laura T., Park, Sung-Ho, Giannopoulou, Eugenia, Ivovic, Aleksandra, Park-Min, Kyung-Hyun, Siegel, Richard M., Ivashkiv, Lionel B.

Journal:

Nature Reviews Rheumatology (formerly Nature Clinical Practice Rheumatology)

Year:

2019

Language:

english

File:

PDF, 1.79 MB

english, 2019

33

The Cytokine TNF Promotes Transcription Factor SREBP Activity and Binding to Inflammatory Genes to Activate Macrophages and Limit Tissue Repair

Kusnadi, Anthony, Park, Sung Ho, Yuan, Ruoxi, Pannellini, Tania, Giannopoulou, Eugenia, Oliver, David, Lu, Theresa, Park-Min, Kyung-Hyun, Ivashkiv, Lionel B.

Journal:

Year:

2019

Language:

english

File:

PDF, 5.20 MB

english, 2019

34

The Cytokine TNF Promotes Transcription Factor SREBP Activity and Binding to Inflammatory Genes to Activate Macrophages and Limit Tissue Repair

Kusnadi, Anthony, Park, Sung Ho, Yuan, Ruoxi, Pannellini, Tania, Giannopoulou, Eugenia, Oliver, David, Lu, Theresa, Park-Min, Kyung-Hyun, Ivashkiv, Lionel B.

Journal:

Year:

2019

File:

PDF, 5.20 MB

2019

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